pae_to_domains

 1"""
 2[pae_to_domains](https://github.com/isblab/af_pipeline/tree/main/af_pipeline/pae_to_domains)
 3===================================
 4
 5- Based on [^pae_to_domains] by Tristan Croll.
 6
 7- Functions implementing community-detection algorithms to identify domains from PAE matrices.
 8
 9- Currently, the following algorithms are implemented:
10    - [Fast label propagation](https://networkx.org/documentation/stable/reference/algorithms/generated/networkx.algorithms.community.label_propagation.fast_label_propagation_communities.html)
11    - [Greedy modularity communities](https://networkx.org/documentation/stable/reference/algorithms/generated/networkx.algorithms.community.modularity_max.greedy_modularity_communities.html)
12    - [Leiden algorithm](https://igraph.org/python/versions/0.10.1/api/igraph.community.html)
13
14[^pae_to_domains]: Tristan Croll, "Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix": https://github.com/tristanic/pae_to_domains
15"""