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tools

Organization

  • matrix_patches: Contains MatrixPatches class, which contains methods for extracting patches of residues based on a 2D binary contact map.

  • structure_tools: Contains functions for handling structure files or objects. Also contains classes RenumberResidues and ResidueSelect for renumbering residues in a structure and selecting specific residues, respectively.

 1"""
 2[tools](https://github.com/isblab/af_pipeline/tree/main/af_pipeline/tools)
 3=============
 4
 5## Organization
 6
 7- **matrix_patches**: Contains [`MatrixPatches`](tools/matrix_patches.html#MatrixPatches) class, which contains methods for extracting patches of residues based on a 2D binary contact map.
 8
 9- **structure_tools**: Contains functions for handling structure files or objects. Also contains classes [`RenumberResidues`](tools/structure_tools.html#RenumberResidues) and [`ResidueSelect`](tools/structure_tools.html#ResidueSelect) for renumbering residues in a structure and selecting specific residues, respectively.
10
11"""