Visualizing segmentations¶

Now, run the following command on each of the segmentations to visualize an overlay of the segmentation on the input tomogram in Napari:

python src/picket/accessories/see_segmentations.py <path_to_segmentation> <segmentation_type>

where segmentation_type is either semantic_segmentation or instance_segmentation.

Note

This step displays the segmentation overlayed on the input tomogram in a Napari window.

Fig. 3A: Output from S1 - Semantic segmentation

Fig. 2A: Output from S1 - Semantic segmentation

Fig. 3B: Output from S2 - Instance segmentation

Fig. 2B: Output from S2 - Instance segmentation